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bioimage-analysis
synthetic-sciences/openscienceSkill
Microscopy image analysis for cell biology. Cell segmentation (Cellpose, watershed), object tracking (trackpy), morphology quantification, colony counting, colocalization analysis, and cytoskeleton characterization. For pathology WSI use pathml; for flow cytometry use flow-cytometry-analysis.
Why this score
This repo hosts 10 skills, so its 4,120 stars are split between them (about 412 each) for scoring.
Popularity score: 75/100 from public GitHub signals only. It shows how widely used and maintained this is, not how well it works. Not included yet: the fake-star check. The security scan is shown separately and doesn't change the score. How we rank
Security
Scanned Oct 21, 2026 at commit 493f9261f94b, with Cisco's open-source skill-scanner.
What its code does:
- Runs code it builds while running (eval or exec) Harder to read ahead of time, since the code is assembled while it runs.scripts/segment_cells.py:92
A scan lists patterns in the code. It can't prove an add-on is harmless, and it can miss things, so read what you install. How we scan
Alternatives
Nothing from another maker does quite the same job yet.