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batch-processing-clinical-text
Run large-scale batch NER, PII extraction, or de-identification over many clinical notes on-device with OpenMed, with sharding, checkpointing, resumability, and append-only JSONL output. Use when the user needs to process a corpus or folder of notes, de-identify a dataset, run NER over thousands of documents, build a resumable batch pipeline, or stream results to JSONL without holding everything in memory. Covers process_batch / BatchProcessor / BatchItem / BatchResult, the operation= selector (analyze_text | extract_pii | deidentify), iter_process streaming, the PHI-safe on_progress callback,
Why this score
This repo hosts 10 skills, so its 5,697 stars are split between them (about 570 each) for scoring.
Popularity score: 77/100 from public GitHub signals only. It shows how widely used and maintained this is, not how well it works. Not included yet: the fake-star check. The security scan is shown separately and doesn't change the score. How we rank
Security
Scanned Oct 20, 2026 at commit 8440bdac5962, with Cisco's open-source skill-scanner.
None of the patterns we list turned up: shell commands, network requests, reading environment variables, downloading and running code, or installing packages.
A scan lists patterns in the code. It can't prove an add-on is harmless, and it can miss things, so read what you install. How we scan
Alternatives
Other makers' add-ons that do the same job, next to this one.
| Name | Score | Stars | Context | Updated |
|---|---|---|---|---|
| This onebatch-processing-clinical-text maziyarpanahi/openmed · Skill | 77 | ★ 5.7k | ≈158 always | 16d ago |
| clinical-case-report nexu-io/open-design · Skill Both about clinical | 87 | ★ 103k | ≈23 always | 16d ago |
| clinical-reports K-Dense-AI/claude-scientific-writer · Skill Both about clinical and de | 73 | ★ 2.5k | ≈76 always | 27d ago |
| batch ww-w-ai/bkit-gemini · Skill Both about batch and process | 49 | ★ 66 | ≈13 always | 1mo ago |
| clinical-trials-database google-deepmind/science-skills · Skill Both about clinical | 75 | ★ 3.3k | ≈26 always | 20d ago |
| batch-operations vudovn/ag-kit · Skill Both about batch and operation | 79 | ★ 8.2k | ≈46 always | 17d ago |