arboreto
K-Dense-AI/scientific-agent-skillsSkill
Infers candidate gene regulatory networks from bulk or single-cell expression data using AertsLab Arboreto GRNBoost2 and GENIE3. Use for transcription factor-target association ranking, compatible Dask execution, sparse expression inputs, and network stability checks.
Why this score
This repo hosts 10 skills, so its 52,925 stars are split between them (about 5,293 each) for scoring.
Popularity score: 87/100 from public GitHub signals only. It shows how widely used and maintained this is, not how well it works. Not included yet: the fake-star check. The security scan is shown separately and doesn't change the score. How we rank
Security
Scanned Oct 20, 2026 at commit 593377bb0487, with Cisco's open-source skill-scanner.
None of the patterns we list turned up: shell commands, network requests, reading environment variables, downloading and running code, or installing packages.
A scan lists patterns in the code. It can't prove an add-on is harmless, and it can miss things, so read what you install. How we scan
Alternatives
Other makers' add-ons that do the same job, next to this one.
| Name | Score | Stars | Context | Updated |
|---|---|---|---|---|
| This onearboreto K-Dense-AI/scientific-agent-skills · Skill | 87 | ★ 53k | ≈69 always | 16d ago |
| alterlab-arboreto AlterLab-IEU/AlterLab-Academic-Skills · Skill Same job: audio, voice & music | 55 | ★ 76 | ≈115 always | 21d ago |