anndata
K-Dense-AI/scientific-agent-skillsSkill
Handles annotated matrices in single-cell analysis, .h5ad and Zarr files, and integration with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.
Why this score
This repo hosts 10 skills, so its 52,925 stars are split between them (about 5,293 each) for scoring.
Popularity score: 87/100 from public GitHub signals only. It shows how widely used and maintained this is, not how well it works. Not included yet: the fake-star check. The security scan is shown separately and doesn't change the score. How we rank
Security
Scanned Oct 20, 2026 at commit 593377bb0487, with Cisco's open-source skill-scanner.
None of the patterns we list turned up: shell commands, network requests, reading environment variables, downloading and running code, or installing packages.
A scan lists patterns in the code. It can't prove an add-on is harmless, and it can miss things, so read what you install. How we scan
Alternatives
Other makers' add-ons that do the same job, next to this one.
| Name | Score | Stars | Context | Updated |
|---|---|---|---|---|
| This oneanndata K-Dense-AI/scientific-agent-skills · Skill | 87 | ★ 53k | ≈71 always | 16d ago |
| alterlab-anndata AlterLab-IEU/AlterLab-Academic-Skills · Skill Both about anndata and zarr | 55 | ★ 76 | ≈144 always | 21d ago |